PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00019082-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family M-type_MADS
Protein Properties Length: 227aa    MW: 25579.6 Da    PI: 10.5206
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00019082-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF71.66.7e-231662349
                        --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
              SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                         e++sn qvtfskRr g++KKA+EL++LC+aeva+i+fs+  k++ +
  WALNUT_00019082-RA 16 MESESNLQVTFSKRRSGLFKKASELCTLCGAEVAIIVFSPGKKVFSF 62
                        699*************************************9999887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006624.123666IPR002100Transcription factor, MADS-box
SMARTSM004325.9E-32665IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-27788IPR002100Transcription factor, MADS-box
CDDcd002651.74E-34778No hitNo description
PRINTSPR004041.2E-18828IPR002100Transcription factor, MADS-box
PfamPF003195.9E-251562IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-182843IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-184364IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009960Biological Processendosperm development
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MERKSKGRQK IKMMKMESES NLQVTFSKRR SGLFKKASEL CTLCGAEVAI IVFSPGKKVF  60
SFGHPSVEPI IDRFLTPNPP QIKSGTLQLI EAHRNASVRQ LNMQLTQITN QLEAEKKRGE  120
ELKRMRQASQ GQCWWEAPIE QLGLPQLEQL KLSLEGLKRN VAKQSDRLLF QTSNPPPAQF  180
YGAGSSINQS PIPLDTKIPY YAKNMNAGYS GNAMPRVYNL GYGRGFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3p57_J6e-16792186Myocyte-specific enhancer factor 2A
3p57_I6e-16792186Myocyte-specific enhancer factor 2A
3p57_D6e-16792186Myocyte-specific enhancer factor 2A
3p57_C6e-16792186Myocyte-specific enhancer factor 2A
3p57_B6e-16792186Myocyte-specific enhancer factor 2A
3p57_A6e-16792186Myocyte-specific enhancer factor 2A
3kov_J6e-16792186Myocyte-specific enhancer factor 2A
3kov_I6e-16792186Myocyte-specific enhancer factor 2A
3kov_B6e-16792186Myocyte-specific enhancer factor 2A
3kov_A6e-16792186Myocyte-specific enhancer factor 2A
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015866383.11e-106PREDICTED: agamous-like MADS-box protein AGL62
SwissprotQ9FKK22e-70AGL62_ARATH; Agamous-like MADS-box protein AGL62
TrEMBLA0A067EEZ41e-105A0A067EEZ4_CITSI; Uncharacterized protein
STRINGPOPTR_0009s08750.11e-95(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-71AGAMOUS-like 62